| Filial | 85.667.947/0002-94 | COOPERATIVA AGROINDUSTRIAL COOPERJA | PRAIA GRANDE / SC | Ativa | |
| Filial | 85.667.947/0003-75 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0004-56 | COOPERATIVA AGROINDUSTRIAL COOPERJA | PRAIA GRANDE / SC | Ativa | |
| Filial | 85.667.947/0005-37 | COOPERATIVA AGROINDUSTRIAL COOPERJA | PRAIA GRANDE / SC | Ativa | |
| Filial | 85.667.947/0006-18 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0007-07 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTO ANTONIO DA PATRULHA / RS | Ativa | |
| Filial | 85.667.947/0008-80 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTA ROSA DO SUL / SC | Ativa | |
| Filial | 85.667.947/0009-60 | COOPERATIVA AGROINDUSTRIAL COOPERJA | BALNEARIO GAIVOTA / SC | Ativa | atual |
| Filial | 85.667.947/0010-02 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0011-85 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0012-66 | COOPERATIVA AGROINDUSTRIAL COOPERJA | MORRINHOS DO SUL / RS | Ativa | |
| Filial | 85.667.947/0013-47 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SOMBRIO / SC | Ativa | |
| Filial | 85.667.947/0014-28 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTA ROSA DO SUL / SC | Ativa | |
| Filial | 85.667.947/0015-09 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0016-90 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTO ANTONIO DA PATRULHA / RS | Ativa | |
| Filial | 85.667.947/0017-70 | COOPERATIVA AGROINDUSTRIAL COOPERJA | TRES CACHOEIRAS / RS | Ativa | |
| Filial | 85.667.947/0020-76 | COOPERATIVA AGROINDUSTRIAL COOPERJA | CRICIUMA / SC | Ativa | |
| Filial | 85.667.947/0022-38 | COOPERATIVA AGROINDUSTRIAL COOPERJA | ARCOVERDE / PE | Ativa | |
| Filial | 85.667.947/0023-19 | COOPERATIVA AGROINDUSTRIAL COOPERJA | PRAIA GRANDE / SC | Ativa | |
| Filial | 85.667.947/0024-08 | COOPERATIVA AGROINDUSTRIAL COOPERJA | FEIRA DE SANTANA / BA | Ativa | |
| Filial | 85.667.947/0026-61 | COOPERATIVA AGROINDUSTRIAL COOPERJA | — | Ativa | |
| Filial | 85.667.947/0027-42 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0028-23 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SIDEROPOLIS / SC | Ativa | |
| Filial | 85.667.947/0029-04 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SAO FRANCISCO DE PAULA / RS | Ativa | |
| Filial | 85.667.947/0030-48 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0031-29 | COOPERATIVA AGROINDUSTRIAL COOPERJA | ICARA / SC | Ativa | |
| Filial | 85.667.947/0032-00 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTO ANTONIO DA PATRULHA / RS | Ativa | |
| Filial | 85.667.947/0033-90 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0034-71 | COOPERATIVA AGROINDUSTRIAL COOPERJA | TRES CACHOEIRAS / RS | Ativa | |
| Filial | 85.667.947/0035-52 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTO ANTONIO DA PATRULHA / RS | Ativa | |
| Filial | 85.667.947/0036-33 | COOPERATIVA AGROINDUSTRIAL COOPERJA | PORTO ALEGRE / RS | Ativa | |
| Filial | 85.667.947/0037-14 | COOPERATIVA AGROINDUSTRIAL COOPERJA | SANTO ANTONIO DA PATRULHA / RS | Ativa | |
| Filial | 85.667.947/0038-03 | COOPERATIVA AGROINDUSTRIAL COOPERJA | JACINTO MACHADO / SC | Ativa | |
| Filial | 85.667.947/0039-86 | COOPERATIVA AGROINDUSTRIAL COOPERJA | ARARANGUA / SC | Ativa | |
| Filial | 85.667.947/0041-09 | COOPERATIVA AGROINDUSTRIAL COOPERJA | VIAMAO / RS | Ativa | |
| Filial | 85.667.947/0042-81 | COOPERATIVA AGROINDUSTRIAL COOPERJA | MIRANDA DO NORTE / MA | Ativa | |
| Filial | 85.667.947/0043-62 | COOPERATIVA AGROINDUSTRIAL COOPERJA | CACHOEIRA DO SUL / RS | Ativa | |
| Filial | 85.667.947/0044-43 | COOPERATIVA AGROINDUSTRIAL COOPERJA | TREZE DE MAIO / SC | Ativa | |
| Filial | 85.667.947/0045-24 | COOPERATIVA AGROINDUSTRIAL COOPERJA | BOM JESUS / RS | Ativa | |
| Filial | 85.667.947/0046-05 | COOPERATIVA AGROINDUSTRIAL COOPERJA | URUSSANGA / SC | Ativa | |
| Filial | 85.667.947/0047-96 | COOPERATIVA AGROINDUSTRIAL COOPERJA | ELDORADO DO SUL / RS | Ativa | |